Most of the test read files are from the GBS study: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3087801/ 
(available under the accession number SRR072252 at the Sequence Read Archives)

ReadFile1.fa
a subset of the reads from SRR072252 in fasta format

ReadFile2.fa
a different subset of the reads from SRR072252 in fasta format

ReadFile1.fq
a subset of the reads from SRR072252 in fastq format, note that they have been enriched in silico for one of the barcodes to allow for SNP calling while keeping the input data to a minimum

adapters.fa
the adapter sequences as reported for SRR072252

barcodes.txt
the barcode sequences as reported for SRR072252

for_phasing.bam
bam file of reads (from SRP065442) mapping to Chromosome01 of Manihot esculenta (casava) assembly v6.1 from Phytozome11
