About - PlabiPD

Mercator II v0.1 - Description

Mercator II uses the MapMan4 classification structure which has undergone major redesign to provide expansion of many of the former categories (aka BINs). This new BIN structure differs greatly from the MapMan3 structure used for the original Mercator software. Please note that the MapMan4 mapping files generated by Mercator II are currently not compatible with the existing MapMan3 Application Software.
Mercator II uses a combination of sensitive techniques to assign protein sequences to the corresponding categories. These techniques are optimally calibrated for each BIN and no longer require the user to provide running parameters.
This version (v0.1) classifies proteins from 'Metabolism' (BINs 1-14) and 'Transporters' (BIN 34). All proteins which are not assigned to these categories will currently be assigned to BIN 35 (unknown proteins). As new classification BINs are added, the Mercator II version number will be incremented.

Sequence type

Protein DNA

Include Prot-scriber annotations (Beta version)

Include Swissprot annotations

Upload FASTA file

Use demo FASTA file

Job name

Email address

Select one or more Mercator4 'User jobs' and/or 'Reference species annotations' below to view the bin count results on the tree viewer.

User jobs

Reference species annotations

Select from reference/user job proteomes to display the differences visually on the heatmap

Select baseline proteome (proteome A):

Select comparison proteome (proteome B):